Quantitative
Analysis of ATM, ATR and γ-H2AX as DNA Damage Sensor Proteins through
Western Blotting
Bhavna Dwivedi2, P. K. Mishra1, S. K. Mishra2
1Bhopal Memorial Hospital and Research Centre, Bhopal
2Department of
Biotechnology, Govt. New Science College, Rewa
486491 (MP)
*Corresponding Author E-mail: bhavna18.bt@gmail.com
ABSTRACT:
Living cells sometimes encounter continuous or accidental exposure
of genotoxic agents which misbalances the integrity
of subcellular components. DNA damage by these genotoxic agents initiates various cellular responses.
These cellular responses include sensors, transducers and effectors. Sensor
protein act at the frontline of the DNA response mechanism. The transducer
amplifies the intracellular signals to the down stream
regulatory molecules. Then the effector molecules
progresses towards the execution of cell cycle arrest, DNA repair or apoptosis.
The most important sensor proteins are ATM and ATR. One of the most imperative
substrate that is phosphorylated by these protein kinases is γ-H2AX which is a vital component for
nuclear foci formation to execute DNA repair mechanisms. This complete process
is under tight regulation and any imbalance in these processes may lead to
hypersensitivity to cellular stress and susceptibility to DNA damage, genomic
effects and resistance to apoptosis, thus initiating the cascade of
carcinogenesis. There are various agents that modifies DNA molecule, for
example; environmental isocyanates and their
derivatives that have capability to cause toxicogenomic
effects. Isocyanates are thus becoming of interest in
the field of genetic toxicology as they may react with DNA to produce DNA
damage.
KEYWORDS: DNA Damage, Genotoxic
agent, ATM.
INTRODUCTION:
To ensure faithful duplication and inheritance of genetic
material, the cell has evolved with the ability to detect and propagate the
initial DNA damage signal to elicit cellular responses that include cell cycle
arrest, DNA repair, transcriptional reprogramming, senescence and apoptosis,
which collectively have been termed the DNA damage response. Dysregulation of components involved in these processes
contributes to genomic instability, which in turn leads to tumorigenesis.
This is supported by the fact that clinical mutations in proteins that play a
role in the DNA damage response often predispose individuals to cancer
development. Cellular response to genotoxic stress is
an intricate process, and it usually starts with the “sensing” or “detection”
of the DNA damage, followed by a series of events that includes signal
transduction and activation of transcription factors (Yang et al.,
2004).
Signalling pathways are rapidly activated after
exposure to DNA damaging stresses and proteins are recalled in the active and
functional form, in order to efficiently participate in DNA damage response
(Jang & Lee, 2004). The DNA-damage
response is a conserved mechanism that enables cells to withstand endogenously
and exogenously induced DNA lesions. In response to DNA damage, rapid
recruitment of a host of proteins ensues, enabling the sensing, amplification
and transduction of the DNA-damage signal to promote cell-cycle arrest, DNA
repair, senescence or apoptosis. Accumulation of these proteins can be readily
detected in vivo as nuclear dots or foci because these proteins surround
double-strand breaks (DSBs) and themselves become markers for DSBs. This
network of proteins has become increasingly complex because knowledge of this
system has evolved from a linear kinase signalling cascade in which phosphorylation
is the main signalling modification to the currently
proposed intricate network involving protein ubiquitylation,
phosphorylation, methylation
and signal-amplification loops to regulate the many processes involved in DNA
repair that are integral to the maintenance of genomic stability (Harper & Elledge, 2007).
The two main sensor molecules, Ataxia telangiectasia
mutated (ATM) and ATM and Rad 3 related (ATR), act in
parallel branches at the front line of the DNA damage response pathway. They respond
primarily to different types of DNA damage (Gatei et
al., 2001). ATM reacts mainly to the DNA-damaging agents that cause DSBs,
such as Infra red (IR), and its downstream targets include Check point protein kinase 2 (CHK2), Breast cancer associated protein1 (BRCA1)
and p53 (Matsuoka et al., 2000). ATR along with ATR-interacting protein
(ATRIP), responds primarily to Ultra-Violet radiations (UV) and hydroxyurea (HU)-induced damage, which may potentially
interfere with DNA replication (Cortez et al., 2001). ATR regulates CHK1
and BRCA1 (Chen, 2000), but phosphorylation of p53 is
also possible (Tibbetts et al., 1999). Due to
ATM and ATR, BRCA1 becomes phosphorylated not only at
overlapping but also at distinct residues, depending on the type of the DNA lesion
(Gatei et al., 2001). Moreover, the two
pathways overlap and often cooperate with each other to ensure efficient repair
without delay and to maintain genomic integrity (Liu et al., 2000). The
real DNA damage sensors must have these properties to function effectively:
First, a sensor must be able to detect a small number of DNA lesions within the
genome of a cell. A single DNA DSB, for example, can be sufficient to cause
apoptosis (Rich et al., 2000), or can directly inactivate key genes,
lead to chromosomal translocations or generate unstable chromosomal
abnormalities (Gent et al., 2001). Secondly, the sensor needs to trigger
events that lead to an amplification of the initial signal so that global
cellular changes can ensue. DNA damage sensors recognize the damage and
initiate the subsequent events. Breaks in the DNA backbone are picked up by
'checkpoint' proteins, which sit at the top of complex signalling
cascades that hail repair troops to the damage site. Two groups of proteins
have been identified as checkpoint specific damage sensors: ATM and ATR
(Durocher et al., 2001) and the RFC/PCNA (clamp loader/polymerase clamp)
related Rad17-RFC/ Rad9-Rad1-Hus1 (9-1-1) complex. We attempt to evaluate the signalling pathways of different proteins ATM, ATR and
their important substrate γ-H2AX involved in DNA damage responses in human
kidney epithelial cells after exposed to isocynates
to show its genotoxic effects. This hypothesis would
enhance the understanding of the relevance of specific DNA repair pathways in
counteracting the potentially harmful consequences of genetic insults.
Therefore, it will provide the tools to investigate the effects of DNA repair
disorders and decreased repair capacity on the toxicity and carcinogenic
properties of genotoxins.
MATERIALS AND METHODS:
The HEK293 cells were seeded at the density of 1x105 cells/60 mm
culture dishes in EMEM supplemented with 10% fetal calf serum and fetal bovine
serum, 1% antibiotic– antimycotic
(penicillin/streptomycin/amphotericin), and 2mM
L-glutamine at 37°C in the humidified atmosphere of 5% CO2 in air as per ATCC
catalogue instructions. After optimum confluency, the
cells were transfected with an experimental agent, N-succinimidyl N-methylcarbamate.
At the onset of the experiments, the cells were at an exponential and
asynchronous phase of growth. The cells were treated with N-Succinimidyl
N-Methylcarbamate and were incubated as per the
experimental design as follows:
S. No. |
Concentration (N-succinimidyl N-methylcarbamate) |
Incubation Time |
1 |
Nil |
Control |
2 |
6μl |
6hrs |
3 |
6μl |
12 hrs |
4 |
6μl |
24 hrs |
5 |
6μl |
48 hrs |
6 |
6μl |
72 hrs |
7 |
6μl |
96 hrs |
Following cells were collected for various parameters
At first protein samples were prepared then western blotting done.
For that the samples (proteins) were mixed with the 2X sample buffer and then
along with markers (For SDS Profile) were loaded into the wells by the help of
Hamilton syringe and were run for minimum 2 hours with a constant current. In
our experiment we provided 150V for stacking gel and 200V in resolving gel. A
piece of Nitrocellulose membrane was cut according to the size of gel and was
wet firstly in distilled water for 5 minutes and then transferred in 1X pre
cooled transfer buffer for 5 minutes. Hofaer semidry
transfer unit accomplished electrophoretic transfer
of the protein bands onto the nitrocellulose membrane. Transfer is done on
basis of capillary action by providing current. Transfer unit rapidly transfer
proteins from polyacrylamide gel onto a membrane by
means of a low current and low voltage electrode transfer with minimal joule
heating. Transfer is completed in 2 hour. When the transfer of proteins was
completed, the nitrocellulose membrane was separated from the SDS-Polyacrylamide gel and soaked in a concentrated non
antigenic protein solution (blocking solution; e.g., a solution of fat free
milk). Blocking reagent blocked the non-specific sites of proteinsas
well as it masked all the proteins on membrane. The nitrocellulose membrane was
placed in an incubation vessel containing Blocking reagent (5%) and incubated
for one hour at room temperature on the tilting shaker to block non specific
binding sites.
Antibody treatment:
Primary antibody (A Rabbit Polyclonal IgG)
that binded to the transferred protein was detected
by using a secondary antibody (Anti-rabbit IgG/
Anti-mouse IgG) AP conjugated (Alkaline phosphatase) which binds to the primary antibody and was
visualized by using an ALP (Alkaline phosphatase)
conjugated substrate. Blocking reagent was discarded and washed with 1X PBST
three times with an interval of 10 minutes at room temperature on the tilting
shaker. The washing solution was removed and now added primary antibody (A
Rabbit Polyclonal IgG Antibody in a 1:1000 dilutions)
solution to the nitrocellulose membrane and incubated for 2-3 hours at room
temperature or over night at 2-4 oC. After incubation primary antibody solution
was discarded and washed with1X PBST three times with an interval of 10 minutes
at room temperature on the tilting shaker. PBST is strong tween-20 detergent it
washed unbounded antibodies and avoids false binding. The washing solution was
removed and secondary antibody (Anti-rabbit IgG AP
conjugated diluted in a ratio of 1:2500) was added to the nitrocellulose
membrane and incubated for 2-3 hours at room temperature. Secondary antibody
solution was discarded and washed with 0.1% PBST three times with an interval
of 10 minutes at room temperature on the tilting shaker. The washing solution
was removed carefully so that the nitrocellulose membrane should not be
completely dried. AP conjugated (Alkaline phosphatase)
substrate was used and it was fluorescent so always prevented from light.
Substrate reagent (5 ml) was added and incubated at room temperature on the
tilting shaker in dark room for 5-10 minutes the bands were developed on the
nitrocellulose membrane. The nitrocellulose membrane was washed with 0.1% PBST
2-3 times to remove unbound substrate and was photographed to make the record
of the protein bands.
RESULT:
In the quantitative analysis of proteins
through western blotting the expression of proteins were increased with time in
treated cells as comparison to controls. The intensity of band is proportional
to protein expressed. This data shows progressive expression of both proteins
(ATM and ATR) which was maximum at 24 hrs. Here
β-actin acts as a loading control which is a
housekeeping gene. Loading controls are essential for proper interpretation of
western blot. Beta- Actin is a relatively stable cytoskeletal protein generally present at a constant level
in cells, regardless (in most cases) of experimental treatment or technical
procedure. For this reason, measurement of beta-Actin
is generally used as an internal control for experimental error.
Western Blott analysis of ATM and ATR
proteins in different time interval with comparisons to β-actin load as control.
CONCLUSION:
Isocyanates are considered as highly reactive
molecules because of their potential to modify biomolecules
under physiological conditions. These compounds form covalent adducts with
critical macromolecules such as nucleic acids resulting in a series of
biotransformation events that initiate with the generation of the reactive
intermediates (Shelby et al., 1987; Pearson et al., 1990; Slatter et al., 1991; Marczynski
et al., 1992). DNA damage leading to cellular demise in mammalian cells
upon treatment with isocyanates has been reported (Beyerbach et al., 2006). It has been also shown that
‘carbamate’ the reactive intermediate of isocyanates also induces the analogous upshot (Yoon et
al., 2001). MIC, one of the most toxic isocyanates
is known to exert immunological, mutagenic and genotoxic
alterations (Deo et al., 1987; Saxena et al., 1988; Goswami
et al., 1986 ) and since MIC is an important industrial byproduct with
diverse applications. We evaluated the genotoxicity
of MIC on cultured human kidney epithelial cell line. DNA damage responses in
these cells were evaluated using N-Succinimidyl
Nmethylcarbamate, a MIC substitute. Previous
data have shown that MIC exposure can lead to a series of biotransformation
reactions in mammals (Slatter et al., 1991),
thereby exerting mutagenic and genotoxic alterations
(Anderson et al., 1988). Extent of DNA damage following treatment of
cultured human kidney epithelial cell line with N-Succinimidyl
N-methylcarbamate showed a time course
dependent response. Previous study have demonstrated that the qualitative study
of the IMR-90( human lung fibroblast) cells treated with N-succinimidyl N-methylcarbamate
showed an elevated expression of phospho-ATR, phospho-ATM and accumulated phospho-H2AX foci indicative of
increased nuclear relocalization through aggregates
and enhanced binding to the damaged sites (Mishra et
al., 2009). Previous data have shown that western blot analysis of ATM, ATR
and γH2AX after treatment with 5-azadC showed increased expression of
these proteins. In our findings Also quantitative evaluation of these
proteins through western blot had been showed elevated expression of these
proteins with time in bands pattern. ATM and ATR, protein kinases,
act as central mediators in response to DNA DSBs. An important substrate for
the ATM kinase cascade is H2AX. It is a variant isoform of the histone H2A
protein family. It is demonstrated that histone H2AX
becomes extensively phosphorylated on serine 139
residues at the site of DNA double strand breaks thereby forming large distinct
nuclear γH2AX foci. In conclusion, the result presented herein demonstrates that expression
of proteins is maximum at 24hrs indicating the extent of DNA damage to be
maximum at this point when cultured mammalian cells are treated with N-succinimidyl N-methylcarbamate.
Isocynates induces DNA damage responses in these cell
lines suggestive of causing immune alterations. We anticipate these data along
with other studies reported in the literature would help to design better
approaches in risk assessment of occupational and accidental exposure to isocyanates and also helpful to understand about isocyanate induced genomic alterations in relation to the
development of carcinogenicity. How much an individual is exposed to these
agents and how their cells respond to DNA damage are critical determinants of
whether that individual will develop cancer (Kastan
and Bartek, 2004). These cellular responses are
important for determining toxicities and because these response pathways seem
to be major protectors from cancer development, the study of these pathways
could lead to effective and new approaches to the reduction of cancer
development. For e.g. disruptions in the ATR pathway do cause genomic
instability, and ATR is activated by most cancer chemotherapies. Furthermore,
ATR signaling is a promising target for cancer drug development (Collins and
Garrett, 2005; Kaelin, 2005).
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Received on 11.03.2014 Modified on 22.03.2014
Accepted on 18.04.2014
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